Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs111677993 chr4:147776510 A/G 1.97E-5 523 40 37.72 11.47 KM Plot
KIRC rs111828680 chr21:44321603 C/T 4.08E-10 515 43.03 33.97 7.18 KM Plot
KIRC rs111853634 chr21:44272963 C/T 1.29E-7 521 42.2 32.42 7.18 KM Plot
KIRC rs11205014 chr1:152483634 C/T 2.02E-5 515 34.83 44.67 37.83 KM Plot
KIRC rs11205035 chr1:152532832 A/G 6.3E-5 525 36.37 43.8 37.77 KM Plot
KIRC rs112073313 chr3:48373689 A/G 2.68E-5 506 39 42.88 23.1 KM Plot
KIRC rs112085494 chr6:2376762 AC/A 5.58E-7 515 40 39.07 15.55 KM Plot
KIRC rs112237505 chr21:44283785 G/A 7.95E-14 519 43.03 33.07 3.37 KM Plot
KIRC rs112373714 chr21:44288594 C/T 4.35E-13 520 42.75 33.07 3.37 KM Plot
KIRC rs112464402 chr11:34803943 T/TA 1.49E-7 522 40 38.47 3.3 KM Plot
KIRC rs1125483 chr7:46597585 C/T 3.23E-5 527 27.48 33.8 47.75 KM Plot
KIRC rs112686723 chr21:44340075 G/C 6.94E-10 514 42.47 33.07 7.18 KM Plot
KIRC rs112764845 chr21:44253916 C/T 2.1E-7 516 41.13 31.75 7.18 KM Plot
KIRC rs112772757 chr10:126207728 G/A 4.88E-6 525 40 37.77 3.67 KM Plot
KIRC rs113292545 chr21:44315624 C/T 7.19E-13 517 42.75 33.97 3.37 KM Plot